DreEX6070896 @ danRer10
Exon Skipping
Gene
ENSDARG00000039145 | plaub
Description
plasminogen activator, urokinase b [Source:ZFIN;Acc:ZDB-GENE-030619-15]
Coordinates
chr12:46752016-46754721:+
Coord C1 exon
chr12:46752016-46752083
Coord A exon
chr12:46752633-46752678
Coord C2 exon
chr12:46754620-46754721
Length
46 bp
Sequences
Splice sites
3' ss Seq
TAACTTGTTGTGATTTCCAGAAA
3' ss Score
7.38
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTAGAGGCGAGATGTCTGGAATTCTCGTGTGGAGTTTGATTCTGGCTTTAACAGCTCTCACGGTGTGT
Seq A exon
AAAGCTCAGCGCAGACCCTTTCCCAGTGAATCCCATGATAAACCAG
Seq C2 exon
GTGTCTTGTGTCTGAATGGAGGATCGTCTCTATCTTCTCTGTCTGGTCGGCATCTTCTCTGTCTCTGTGCTGAAGGCTTCAGTGGCTCCAGATGTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039145-'4-5,'4-4,5-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126612=hEGF=WD(100=37.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGTGGAGTTTGATTCTGGC
R:
CACATCTGGAGCCACTGAAGC
Band lengths:
140-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]