MmuEX6039897 @ mm9
Exon Skipping
Gene
ENSMUSG00000021822 | Plau
Description
plasminogen activator, urokinase [Source:MGI Symbol;Acc:MGI:97611]
Coordinates
chr14:21656271-21657107:+
Coord C1 exon
chr14:21656271-21656357
Coord A exon
chr14:21656832-21656862
Coord C2 exon
chr14:21657000-21657107
Length
31 bp
Sequences
Splice sites
3' ss Seq
GTCACCTTCATCTCTTGCAGGGT
3' ss Score
10.73
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
AACTGCTGTCTAGAGCCCAGCGGCACTACCATGAAAGTCTGGCTGGCGAGCCTGTTCCTCTGCGCCTTGGTGGTGAAAAACTCTGAA
Seq A exon
GGTGGCAGTGTACTTGGAGCTCCTGATGAAT
Seq C2 exon
CAAACTGTGGCTGTCAGAACGGAGGTGTATGCGTGTCCTACAAGTACTTCTCCAGAATTCGCCGATGCAGCTGCCCAAGGAAATTCCAGGGGGAGCACTGTGAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021822-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066076=Prokineticin=PU(19.1=94.7)
A:
PF066076=Prokineticin=FE(10.6=100),PF079748=EGF_2=PU(2.9=9.1)
C2:
PF066076=Prokineticin=FE(38.3=100),PF079748=EGF_2=PD(94.3=89.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAAAGTCTGGCTGGCGAG
R:
GCATCGGCGAATTCTGGAGAA
Band lengths:
126-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: