BtaEX6105752 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005947 | PLAU
Description
Bos taurus plasminogen activator, urokinase (PLAU), mRNA. [Source:RefSeq mRNA;Acc:NM_174147]
Coordinates
chr28:29965401-29966216:+
Coord C1 exon
chr28:29965401-29965488
Coord A exon
chr28:29965937-29965970
Coord C2 exon
chr28:29966109-29966216
Length
34 bp
Sequences
Splice sites
3' ss Seq
CCACTCCCCTTCTCTTCCAGGGC
3' ss Score
11.8
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
AGCTTCTGTCTAGAGCCCCAGCCTTGCCACCATGAGGGTCCTGCTGGCATGCCTGCTCGTCTGTGCCCTGGTCGTGAGCGACTCTGAT
Seq A exon
GGCAGCAATGAAGTTCATAAAGAGTCTGGTGAAT
Seq C2 exon
CGAACTGTGGCTGTCTGAACGGAGGAAAATGTGTAACCTACAAGTACTTCTCCAACATTCAGCGATGCAGTTGCCCAAAGAAATTCCAAGGGGAACACTGTGAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005947-'3-2,'3-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCTGTCTAGAGCCCCAG
R:
TTTTCCTCCGTTCAGACAGCC
Band lengths:
117-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]