RnoEX6051153 @ rn6
Exon Skipping
Gene
ENSRNOG00000010516 | Plau
Description
plasminogen activator, urokinase [Source:RGD Symbol;Acc:3343]
Coordinates
chr15:3649618-3650422:-
Coord C1 exon
chr15:3650335-3650422
Coord A exon
chr15:3649875-3649905
Coord C2 exon
chr15:3649618-3649725
Length
31 bp
Sequences
Splice sites
3' ss Seq
ACCCCTACCTTCTCTTTCAGGGT
3' ss Score
12.41
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
AACTGCTGTCTAGAGAGAGCCCAGCGTCAGTACCATGAGAGTCTGGCTTGCGAGCCTGTTCCTCTGCGCCTTGGTGGCGCACTCTGAA
Seq A exon
GGTGGCAGTGAACTTGGAGCTTCTGATGAAT
Seq C2 exon
CAAACTGTGGCTGTCAGAACGGAGGAGTATGTGTGTCCTACAAGTACTTCTCCAGCATTCGAAGATGCAGCTGCCCAAAGAAATTCAAAGGGGAGCACTGTGAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010516-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066076=Prokineticin=PU(18.5=94.4)
A:
PF066076=Prokineticin=FE(10.9=100)
C2:
PF066076=Prokineticin=FE(39.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAGAGTCTGGCTTGCGAG
R:
GCTGCATCTTCGAATGCTGGA
Band lengths:
126-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]