GgaEX6040747 @ galGal3
Exon Skipping
Gene
ENSGALG00000007622 | Q8QGG9_CHICK
Description
NA
Coordinates
chr6:23830654-23831249:+
Coord C1 exon
chr6:23830654-23830725
Coord A exon
chr6:23830841-23831004
Coord C2 exon
chr6:23831102-23831249
Length
164 bp
Sequences
Splice sites
3' ss Seq
ACCACCCTGGCTGCCCGCAGCCG
3' ss Score
8.4
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GACACTGAACAACAACAACATCACGTCCATCCCCGTCTCCAGCTTCAACCACATGCCCAAGCTGCGAACGTT
Seq A exon
CCGCCTGCACTCCAACCACCTGTTCTGCGACTGCCACCTGGCCTGGCTGGCACAGTGGCTCCGCCAGCGGCCCACCATCGGGCTCTTCACACAGTGCGCAGCCCCGGCACAGCTCCGCGGCCTCAATGTGGCTGAGATCCAGAAGAATGAGTTCAGCTGCTCTG
Seq C2 exon
GACAAGCAGATGGAGTGCATGCACAGCTCTGCAGCTTGTCCTCTGGCTCCTGCCCGGCCATGTGCACCTGCAGCAATGGCATCGTGGACTGTCGGGGCAAGGGGCTGACAGCCATCCCCGCCAACCTGCCCGAGACCATGACGGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007622-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=PD(11.5=12.5),PF0146319=LRRCT=WD(100=46.4)
C2:
PF0146213=LRRNT=WD(100=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGAACAACAACAACATCACGT
R:
ATCTCCGTCATGGTCTCGGG
Band lengths:
218-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]