DreEX0073429 @ danRer10
Exon Skipping
Gene
ENSDARG00000044954 | slit1a
Description
slit homolog 1a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-3]
Coordinates
chr13:462062-464976:-
Coord C1 exon
chr13:464905-464976
Coord A exon
chr13:462538-462701
Coord C2 exon
chr13:462062-462209
Length
164 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTGGTTCTCCCTCAGCCG
3' ss Score
5.4
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
AACTCTGAACAACAACAACATCAGCAGCATCCCAGTGTCCAGCTTCAACCACATGCCCAAGCTCCGGACATT
Seq A exon
CCGTCTGCACTCCAACAATCTGGTCTGTGACTGTGTGCTGTCGTGGCTCTCTCAGTGGCTACGCGAGCGGCCCAACATCGGTCTGTTCACCCAGTGCAGCTCTCCAGCACCGCTGCGAGGACTCAATGTAGCAGAGGTGCAGAAACACGAGTTCAGCTGCTCAG
Seq C2 exon
GTCAGTCTGACAGTGCTGTGGGTCAGTCGTGTAGTTTGAGCAGTGGCTCGTGTCCCGCCGTCTGCTCCTGCAATAACAACATCGTGGACTGCAGAGGGAAAGGCCTGACCCTGATCCCCAGCAGCCTGCCCGACAGCATGACGGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044954-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=PD(11.5=12.5),PF0146319=LRRCT=WD(100=46.4)
C2:
PF0146213=LRRNT=WD(100=56.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGAACAACAACAACATCAGC
R:
ATCTCCGTCATGCTGTCGGG
Band lengths:
219-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]