HsaEX6089765 @ hg19
Exon Skipping
Gene
ENSG00000187122 | SLIT1
Description
slit homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:11085]
Coordinates
chr10:98820397-98823996:-
Coord C1 exon
chr10:98823925-98823996
Coord A exon
chr10:98823212-98823375
Coord C2 exon
chr10:98820397-98820544
Length
164 bp
Sequences
Splice sites
3' ss Seq
GCCATCCTGTCCTCTTGCAGCCG
3' ss Score
11.16
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACCCTGAACAACAACAATATCACCACCATCCCCGTGTCCAGCTTCAACCATATGCCCAAGCTACGGACCTT
Seq A exon
CCGCCTGCACTCCAACCACCTGTTTTGCGACTGCCACCTGGCCTGGCTCTCGCAGTGGCTGAGGCAGCGGCCAACCATCGGGCTCTTCACCCAGTGCTCGGGCCCAGCCAGCCTGCGTGGCCTCAATGTGGCAGAGGTCCAGAAGAGTGAGTTCAGCTGCTCAG
Seq C2 exon
GCCAGGGAGAAGCGGGGCGCGTGCCCACCTGCACCCTGTCCTCCGGCTCCTGCCCGGCCATGTGCACCTGCAGCAATGGCATCGTGGACTGTCGTGGAAAAGGCCTCACTGCCATCCCGGCCAACCTGCCCGAGACCATGACGGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187122-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=PD(11.5=12.5),PF0146319=LRRCT=WD(100=46.4)
C2:
PF0146213=LRRNT=WD(100=56.0),PF138551=LRR_8=PU(9.1=10.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGAACAACAACAATATCACCA
R:
ATCTCCGTCATGGTCTCGGG
Band lengths:
219-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)