BtaEX6099993 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000043991 | SLIT1
Description
slit homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11085]
Coordinates
chr26:18191473-18194536:-
Coord C1 exon
chr26:18194465-18194536
Coord A exon
chr26:18193762-18193925
Coord C2 exon
chr26:18191473-18191620
Length
164 bp
Sequences
Splice sites
3' ss Seq
TCCTCGCCCATCCCCTGCAGCCG
3' ss Score
8.57
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACCCTGAACAACAACAACATCACCACGATCCCCGTGTCCAGCTTCAACCACATGCCCAAGCTGCGGACCTT
Seq A exon
CCGCCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCCCAGTGGCTGAGGCAACGGCCAACCATCGGGCTCTTCACCCAGTGCTCCGGCCCCGCTGGCCTGCGCGGCCTCAATGTGGCTGAGGTCCAGAAGAGTGAGTTCAGCTGCTCAG
Seq C2 exon
GCCAGGGGGAGGCGGGGCGCACGCCCTCCTGCACCCTCTCCTCCGGCTCCTGTCCGGCCATGTGCGCCTGCAGCAACGGCATCGTGGATTGTCGTGGCAAAGGCCTGACCGCCATCCCTGCCAACCTGCCCGAGGCCATGACAGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043991-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=PD(11.5=12.5),PF0146319=LRRCT=WD(100=46.4)
C2:
PF0146213=LRRNT=WD(100=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGAACAACAACAACATCACC
R:
ATCTCTGTCATGGCCTCGGG
Band lengths:
218-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]