GgaEX6040751 @ galGal3
Exon Skipping
Gene
ENSGALG00000007622 | Q8QGG9_CHICK
Description
NA
Coordinates
chr6:23817343-23830288:+
Coord C1 exon
chr6:23817343-23817414
Coord A exon
chr6:23817968-23818039
Coord C2 exon
chr6:23830217-23830288
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCCTCCTTCCTACAGACG
3' ss Score
11.83
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GCAGCTGATGGAAAACCAGATCAGTGTGGTGGAGCGTGGTGCATTTGATGACATGAAGGAGCTGGAGCGGCT
Seq A exon
ACGGCTGAACCGCAACCAGCTGCACACCCTGCCCGAGCTCCTCTTCCAGCACAACCAGGCTCTGTCCAGGCT
Seq C2 exon
GGACCTGAGCGAGAACTTCATCCAGGCCATCCCCAGGAAGGCTTTCCGTGGGGCCACAGACCTCAAGAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007622-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=PD(11.5=28.0)
C2:
PF138551=LRR_8=PU(8.2=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGATGGAAAACCAGAT
R:
AAGTTCTTGAGGTCTGTGGCC
Band lengths:
144-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]