MmuEX6032827 @ mm10
Exon Skipping
Gene
ENSMUSG00000025020 | Slit1
Description
slit homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315203]
Coordinates
chr19:41652695-41727141:-
Coord C1 exon
chr19:41727070-41727141
Coord A exon
chr19:41721040-41721111
Coord C2 exon
chr19:41652695-41652766
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTTTACCTTTTCCAGACG
3' ss Score
9.84
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCCT
Seq A exon
ACGGCTGAACCGCAACCAGCTACAAGTGTTGCCTGAACTACTGTTCCAGAACAACCAGGCTCTATCCAGACT
Seq C2 exon
GGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025020_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(14.3=28.0)
A:
PF138551=LRR_8=PD(11.5=28.0)
C2:
PF138551=LRR_8=PU(8.2=20.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAACCAGATCGGAGCTG
R:
AGATTTTTGAGGTCTGTGGCTCC
Band lengths:
136-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types