DreEX6059536 @ danRer10
Exon Skipping
Gene
ENSDARG00000044954 | slit1a
Description
slit homolog 1a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-3]
Coordinates
chr13:465431-486862:-
Coord C1 exon
chr13:486791-486862
Coord A exon
chr13:484911-484982
Coord C2 exon
chr13:465431-465502
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCTTCTTTTCTCCAGACG
3' ss Score
9.97
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCAGCTGATGGAGAACCAGATTGTAACGGTGGAGCGCGGCGCGTTCGACGAGATGAGAGAGCTGGAGAGACT
Seq A exon
ACGTCTGAACAGAAATCAGCTTCACCAGCTTCCAGAGCTCCTGTTCCAGAAGAACGCCGCGCTGTCCAGACT
Seq C2 exon
GGACCTGAGTGAGAACTTCATCCAGGCGATTCCTCGAAAGGCCTTCAGAGGAGCGACGGACATCAAAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044954-'3-5,'3-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=PD(11.5=28.0)
C2:
PF138551=LRR_8=PU(8.2=20.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACCAGATTGTAACGGTGG
R:
AGGTTTTTGATGTCCGTCGCT
Band lengths:
135-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]