RnoEX0083444 @ rn6
Exon Skipping
Gene
ENSRNOG00000026065 | Slit1
Description
slit guidance ligand 1 [Source:RGD Symbol;Acc:69307]
Coordinates
chr1:260900482-260975369:-
Coord C1 exon
chr1:260975298-260975369
Coord A exon
chr1:260968223-260968294
Coord C2 exon
chr1:260900482-260900553
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCTTACCTTTTCCAGACG
3' ss Score
10.04
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GCAGCTGATGGAGAACCAGATTGGAGCTGTGGAACGGGGAGCTTTTGATGACATGAAGGAGTTGGAGCGGCT
Seq A exon
ACGACTGAACCGCAACCAGCTGCAAGTGTTGCCTGAACTACTGTTCCAGAACAACCAGGCTCTGTCCAGACT
Seq C2 exon
GGACCTGAGTGAGAATTCTCTCCAGGCTGTGCCCAGAAAGGCTTTCCGAGGAGCCACAGACCTCAAAAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026065-'4-3,'4-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(42.1=100)
A:
PF138551=LRR_8=PD(5.3=12.0)
C2:
PF138551=LRR_8=PU(8.2=20.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACCAGATTGGAGCTGTG
R:
AGATTTTTGAGGTCTGTGGCTCC
Band lengths:
135-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]