DreEX0073439 @ danRer10
Exon Skipping
Gene
ENSDARG00000099446 | slit1b
Description
slit homolog 1b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-4]
Coordinates
chr22:34931053-34943709:-
Coord C1 exon
chr22:34943638-34943709
Coord A exon
chr22:34941348-34941419
Coord C2 exon
chr22:34931053-34931124
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATGTCCCGGTTTTTCCTCAGGCG
3' ss Score
8.9
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GCACCTCATGGACAACCAGATCGTCTCCATTGACAGGGGAGCCTTCAGTGATCTGAAGGAGCTGGACAGACT
Seq A exon
GCGTCTCAACAGAAACCGTCTCCAGCAACTCCCAGAGCTCCTGTTCCTGAAAAACCCTGCTCTGTCCAGACT
Seq C2 exon
GGATTTGAGTGAAAATAACATCCAGATGATCCCAAGAAGAGCATTCAGAGGAGCTACAGACATCAAAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099446_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(40.4=100)
A:
PF138551=LRR_8=PD(5.3=12.5)
C2:
PF138551=LRR_8=PU(6.6=16.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAACCAGATCGTCTCCA
R:
AGGTTTTTGATGTCTGTAGCTCCT
Band lengths:
136-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]