MmuEX6032827 @ mm9
Exon Skipping
Gene
ENSMUSG00000025020 | Slit1
Description
slit homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315203]
Coordinates
chr19:41727185-41801631:-
Coord C1 exon
chr19:41801560-41801631
Coord A exon
chr19:41795530-41795601
Coord C2 exon
chr19:41727185-41727256
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTTTACCTTTTCCAGACG
3' ss Score
9.84
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCCT
Seq A exon
ACGGCTGAACCGCAACCAGCTACAAGTGTTGCCTGAACTACTGTTCCAGAACAACCAGGCTCTATCCAGACT
Seq C2 exon
GGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025020-'2-4,'2-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(14.3=28.0)
A:
PF138551=LRR_8=PD(5.3=12.0)
C2:
PF138551=LRR_8=PU(8.2=20.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAACCAGATCGGAGCTG
R:
AGATTTTTGAGGTCTGTGGCTCC
Band lengths:
136-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: