GgaEX6041370 @ galGal3
Exon Skipping
Gene
ENSGALG00000002552 | COL3A1
Description
NA
Coordinates
chr7:579743-580267:-
Coord C1 exon
chr7:580214-580267
Coord A exon
chr7:579933-579977
Coord C2 exon
chr7:579743-579841
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTTCTCTAAAACAGGGG
3' ss Score
7.98
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GGTTTGCCTGGGGGACCCGGACCAGCTGGAGAAAATGGGAAGCCTGGAGAGCCT
Seq A exon
GGGCCAAAAGGTGATATTGGAGGACCCGGATTCCCAGGCCCTAAG
Seq C2 exon
GGTGAAAATGGCATCCCAGGTGAACGTGGTGCACAAGGTCCTCCAGGACCTACTGGAGCAAGAGGTGGGCCAGGTCCTGCTGGCTCCGAAGGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002552-'35-38,'35-37,36-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.6=100)
A:
PF0139113=Collagen=FE(19.4=100),PF0139113=Collagen=PU(9.8=53.3)
C2:
PF0139113=Collagen=PD(19.4=42.4),PF0139113=Collagen=FE(39.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGACCAGCTGGAGAAAATG
R:
CACCTTCGGAGCCAGCAG
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]