RnoEX6039561 @ rn6
Exon Skipping
Gene
ENSRNOG00000003357 | Col3a1
Description
collagen type III alpha 1 chain [Source:RGD Symbol;Acc:71029]
Coordinates
chr9:52046520-52047650:+
Coord C1 exon
chr9:52046520-52046573
Coord A exon
chr9:52047041-52047085
Coord C2 exon
chr9:52047552-52047650
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACATAATGTTGGCCTCCTAGGGT
3' ss Score
6.87
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GGCATACCTGGTACCAGTGGTCCTCCAGGAGAAAATGGAAAACCAGGAGAACCA
Seq A exon
GGTCCAAAGGGTGAAGCTGGAGCACCTGGAGTTCCTGGAGGCAAG
Seq C2 exon
GGTGATTCTGGTGCCCCTGGAGAACGTGGACCCCCTGGAACCGCAGGAACCCCTGGGCTTAGAGGTGGAGCTGGACCCCCTGGGCCTGAGGGAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003357-'42-35,'42-34,45-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(14.7=61.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATACCTGGTACCAGTGGT
R:
GGGTCCAGCTCCACCTCTAAG
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]