GgaEX6041370 @ galGal4
Exon Skipping
Gene
ENSGALG00000002552 | COL3A1
Description
Gallus gallus collagen, type III, alpha 1 (COL3A1), mRNA. [Source:RefSeq mRNA;Acc:NM_205380]
Coordinates
chr7:575144-575668:-
Coord C1 exon
chr7:575615-575668
Coord A exon
chr7:575334-575378
Coord C2 exon
chr7:575144-575242
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTTCTCTAAAACAGGGG
3' ss Score
7.98
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GGTTTGCCTGGGGGACCCGGACCAGCTGGAGAAAATGGGAAGCCTGGAGAGCCT
Seq A exon
GGGCCAAAAGGTGATATTGGAGGACCCGGATTCCCAGGCCCTAAG
Seq C2 exon
GGTGAAAATGGCATCCCAGGTGAACGTGGTGCACAAGGTCCTCCAGGACCTACTGGAGCAAGAGGTGGGCCAGGTCCTGCTGGCTCCGAAGGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002552-'40-43,'40-42,41-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGACCAGCTGGAGAAAATG
R:
CACCTTCGGAGCCAGCAG
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]