GgaEX1016883 @ galGal3
Exon Skipping
Gene
ENSGALG00000002509 | COL5A2
Description
NA
Coordinates
chr7:537249-539539:+
Coord C1 exon
chr7:537249-537302
Coord A exon
chr7:537629-537673
Coord C2 exon
chr7:539441-539539
Length
45 bp
Sequences
Splice sites
3' ss Seq
GTGAACTCTCTTATGCATAGGGT
3' ss Score
6.09
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GGCTTACCTGGGCCTCCAGGTCCTCCTGGTGAAGGAGGAAAGCCAGGTGATCAG
Seq A exon
GGTGTTCCCGGAGATCCTGGAGTTGTTGGTCCATTGGGTCCCAGG
Seq C2 exon
GGAGAACGTGGCAACCCGGGGGAACGGGGAGAGCCAGGTGCATCAGGACTTGCAGGTGAAAAGGGTATGGCTGGAGGTCATGGTCCTGATGGGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002509-'35-36,'35-35,36-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.9=100),PF0139113=Collagen=PU(19.1=94.4)
A:
PF0139113=Collagen=PD(18.3=86.7),PF0139113=Collagen=FE(15.7=100)
C2:
PF0139113=Collagen=FE(36.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTACCTGGGCCTCCA
R:
TGACCTCCAGCCATACCCTTT
Band lengths:
134-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]