MmuEX6024068 @ mm9
Exon Skipping
Gene
ENSMUSG00000026042 | Col5a2
Description
collagen, type V, alpha 2 [Source:MGI Symbol;Acc:MGI:88458]
Coordinates
chr1:45452906-45457719:-
Coord C1 exon
chr1:45457666-45457719
Coord A exon
chr1:45453295-45453339
Coord C2 exon
chr1:45452906-45453004
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTGAAACCTGTTTAGGGT
3' ss Score
7.2
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
GGACTTCCTGGACCTCCAGGGCCACCTGGAGAAGGTGGAAAGGCTGGTGATCAA
Seq A exon
GGTGTTCCTGGAGAGCCTGGAGCAGTTGGCCCATTAGGACCTCGG
Seq C2 exon
GGAGAAAGAGGGAATCCTGGAGAAAGAGGAGAGCCAGGGATAACTGGACTGCCTGGGGAGAAAGGCATGGCTGGAGGACATGGCCCTGATGGTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026042-'35-34,'35-33,36-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.2=100),PF0139113=Collagen=PU(18.9=94.4)
A:
PF0139113=Collagen=FE(16.7=100),PF0139113=Collagen=FE(15.6=100)
C2:
PF0139113=Collagen=FE(35.6=100),PF0139113=Collagen=PU(9.4=24.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTCCTGGACCTCCA
R:
GTCCTCCAGCCATGCCTTTC
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: