DreEX6037997 @ danRer10
Exon Skipping
Gene
ENSDARG00000031678 | COL5A2 (2 of 2)
Description
collagen, type V, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2210]
Coordinates
chr9:42859998-42860412:-
Coord C1 exon
chr9:42860359-42860412
Coord A exon
chr9:42860176-42860220
Coord C2 exon
chr9:42859998-42860096
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTCTCTTTTAAGGGT
3' ss Score
13.59
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GGGTTGCCTGGACCAGCAGGTGCTCCTGGGGAGGGAGGAAAACCTGGTGATCAG
Seq A exon
GGTATCCCTGGTGAGGGTGGTCCAGTTGGCCAAATTGGACCAAGG
Seq C2 exon
GGTGAACGTGGAATCCCTGGAGAGAGAGGAGAGTTGGGACCTGCTGGTCTGCCTGGAGCCAAAGGTATCCCAGGAGCACCTGGTCCTGATGGCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031678-'31-36,'31-35,32-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(12.9=57.9)
A:
PF0139113=Collagen=FE(17.6=100)
C2:
PF0139113=Collagen=FE(38.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCCTGGACCAGCAGG
R:
CATCAGGACCAGGTGCTCCT
Band lengths:
143-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]