BtaEX6008531 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027020 | COL5A2
Description
collagen, type V, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2210]
Coordinates
chr2:7265953-7271684:+
Coord C1 exon
chr2:7265953-7266006
Coord A exon
chr2:7271199-7271243
Coord C2 exon
chr2:7271586-7271684
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTAAAAAATGTGTTTTACAGGGG
3' ss Score
7.52
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GGGCTTCCTGGTCCTCCAGGGCCTCCTGGGGAAGCTGGAAAGCCAGGTGATCAG
Seq A exon
GGGGTTCCTGGAGATCCTGGGGCAGTTGGCCCACTAGGACCTAGA
Seq C2 exon
GGAGAACGAGGAAATCCAGGGGAAAGAGGAGAACCAGGAATAACTGGACTTCCTGGTGAGAAAGGAATGGCTGGAGGACATGGTCCTGATGGTCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027020-'34-37,'34-36,35-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.9=100)
A:
PF0139113=Collagen=PD(18.3=86.7),PF0139113=Collagen=PU(19.7=93.3)
C2:
PF0139113=Collagen=FE(45.1=100),PF0139113=Collagen=PU(6.1=15.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTTCCTGGTCCTCCA
R:
GACCATGTCCTCCAGCCATTC
Band lengths:
139-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]