RnoEX0023409 @ rn6
Exon Skipping
Gene
ENSRNOG00000003736 | Col5a2
Description
collagen type V alpha 2 chain [Source:RGD Symbol;Acc:70921]
Coordinates
chr9:52115113-52117228:-
Coord C1 exon
chr9:52117175-52117228
Coord A exon
chr9:52115511-52115555
Coord C2 exon
chr9:52115113-52115211
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCAAATCTGTTTAGGGT
3' ss Score
9.06
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
GGACTTCCTGGGCCTCCAGGGCCACCTGGAGAAGGTGGAAAGCCTGGTGATCAA
Seq A exon
GGTGTTCCTGGAGAGCCTGGAGCTGTTGGGCCATTAGGACCTCGG
Seq C2 exon
GGAGAAAGAGGGAATCCTGGAGAAAGAGGAGAGCCAGGGATAACTGGATTACCTGGGGAGAAAGGCATGGCTGGAGGACATGGCCCTGATGGTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003736-'43-43,'43-42,44-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(16.9=80.0)
C2:
PF0139113=Collagen=FE(45.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTCCTGGGCCTCCA
R:
GTCCTCCAGCCATGCCTTTC
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]