MmuEX6024068 @ mm10
Exon Skipping
Gene
ENSMUSG00000026042 | Col5a2
Description
collagen, type V, alpha 2 [Source:MGI Symbol;Acc:MGI:88458]
Coordinates
chr1:45396061-45400874:-
Coord C1 exon
chr1:45400821-45400874
Coord A exon
chr1:45396450-45396494
Coord C2 exon
chr1:45396061-45396159
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTGAAACCTGTTTAGGGT
3' ss Score
7.2
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
GGACTTCCTGGACCTCCAGGGCCACCTGGAGAAGGTGGAAAGGCTGGTGATCAA
Seq A exon
GGTGTTCCTGGAGAGCCTGGAGCAGTTGGCCCATTAGGACCTCGG
Seq C2 exon
GGAGAAAGAGGGAATCCTGGAGAAAGAGGAGAGCCAGGGATAACTGGACTGCCTGGGGAGAAAGGCATGGCTGGAGGACATGGCCCTGATGGTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026042-'49-47,'49-46,50-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(2.2=11.1),PF0139113=Collagen=FE(25.0=100)
A:
PF0139113=Collagen=PD(19.1=86.7),PF0139113=Collagen=PU(16.9=80.0)
C2:
PF0139113=Collagen=FE(45.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTCCTGGACCTCCA
R:
GTCCTCCAGCCATGCCTTTC
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types