GgaEX6043365 @ galGal3
Exon Skipping
Gene
ENSGALG00000012555 | CCDC148
Description
NA
Coordinates
chr7:37980627-37987425:-
Coord C1 exon
chr7:37987351-37987425
Coord A exon
chr7:37983819-37983940
Coord C2 exon
chr7:37980627-37980730
Length
122 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTATGTGAAAACTAGAAA
3' ss Score
2.86
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATGTTAAATAGCACATAAAAAGGAGTGAACCAAGCCACAGAACAATGTCCACAGCTCAGAGGATTAGGGATGTTG
Seq A exon
AAAATCTGGTGAATCCTATGAGAAATGCTCCTTGCAGTCAGAAGTATAAACCCATTGACTACAAACATCTATGTGAACTCACAGCAGCAGAAAAAGTGGCATCCACAAAAATTCAATTTAAG
Seq C2 exon
ATCAAAAAAGTGGAGCAAATTTCAAAAATTAACAAAGAGCAAATGCTACTGAAACAGCATTGCCAGGTGTGGTGGCGAGAGTATAAAAGACTTAGTGAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012555-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATAGCACATAAAAAGGAGTGAACC
R:
TCTCACTAAGTCTTTTATACTCTCGC
Band lengths:
170-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]