RnoEX6016929 @ rn6
Exon Skipping
Gene
ENSRNOG00000057740 | Ccdc148
Description
coiled-coil domain containing 148 [Source:RGD Symbol;Acc:1561169]
Coordinates
chr3:45117417-45133351:-
Coord C1 exon
chr3:45133289-45133351
Coord A exon
chr3:45132279-45132400
Coord C2 exon
chr3:45117417-45117520
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCTTTATGAAAACAGATA
3' ss Score
5.04
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
ATACGGAAAGCATGAACAGAAGAGACCAGCCATTCACGGTGATTCAGAGGAATGACAGCTCAG
Seq A exon
ATATCCTGGCAGTCCATATGAAAGGTGGGATGAAGAACTCTAGGTATAAGCCGGCAGACTACCAGCAGTTACGTGCCTTAACCGAAGCCACGAAGTCAGCATCTGCTTCCTCAGAGCAGAAG
Seq C2 exon
ATCAGAAAAGCCATGGAGACATCAAGGGCGGCTAAAGAGCAGATGCTGATCAAGCAACACAAGCAGGTGTGGTGGCAGGAACAGGAGAGGCTGAAGGGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057740-'7-11,'7-9,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.419 C2=0.371
Domain overlap (PFAM):
C1:
PF048228=Takusan=PU(14.5=44.4)
A:
PF048228=Takusan=FE(72.7=100)
C2:
PF048228=Takusan=PD(9.1=14.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAAAGCATGAACAGAAGAGA
R:
GATCCCCTTCAGCCTCTCCTG
Band lengths:
163-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]