MmuEX7033506 @ mm10
Exon Skipping
Gene
ENSMUSG00000036641 | Ccdc148
Description
coiled-coil domain containing 148 [Source:MGI Symbol;Acc:MGI:3039583]
Coordinates
chr2:59009082-59018605:-
Coord C1 exon
chr2:59018543-59018605
Coord A exon
chr2:59017544-59017637
Coord C2 exon
chr2:59009082-59009185
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTTTATGAAAAACAGATA
3' ss Score
4.13
5' ss Seq
AAGGTCTGC
5' ss Score
5.38
Exon sequences
Seq C1 exon
ATACGGAAAGCATGAATAGAAGAGACTGGCCCTTCATGATGATTCAGAGAAATGACAGCTCAG
Seq A exon
ATATCCTGGCAGTCCATATGAAAGATGGAACTAGGAGCTCCCGGTATAAGCCGGTGGACTACCAGCAGTTACGGGCCCTAACCGAAGCCACAAG
Seq C2 exon
CTCCAAAAAGCCATAGAGACGTCAAGGGCTGCGAAAGAGCAGATGCTGATCAAGCAACACAAGCAGGTGTGGTGGCAGGAACAGGAGAGGCTGAAGGGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036641-'2-5,'2-4,3-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACGGAAAGCATGAATAGAAGAGAC
R:
CTGATCCCCTTCAGCCTCTCC
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types