GgaEX6043365 @ galGal4
Exon Skipping
Gene
ENSGALG00000012555 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:HGNC:25191]
Coordinates
chr7:35845515-35852384:-
Coord C1 exon
chr7:35852239-35852384
Coord A exon
chr7:35848707-35848828
Coord C2 exon
chr7:35845515-35845618
Length
122 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTATGTGAAAACTAGAAA
3' ss Score
2.86
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CGTGTTTATTGTATGTGTATTTTTAGCATCCTCAGTGTTGGTGTTCTCAAGATATGTTTGTTTCTCAACAGATGTTAAATAGCACATAAAAAGGAGTGAACCAAGCCACAGAACAATGTCCACAGCTCAGAGGATTAGGGATGTTG
Seq A exon
AAAATCTGGTGAATCCTATGAGAAATGCTCCTTGCAGTCAGAAGTATAAACCCATTGACTACAAACATCTATGTGAACTCACAGCAGCAGAAAAAGTGGCATCCACAAAAATTCAATTTAAG
Seq C2 exon
ATCAAAAAAGTGGAGCAAATTTCAAAAATTAACAAAGAGCAAATGCTACTGAAACAGCATTGCCAGGTGTGGTGGCGAGAGTATAAAAGACTTAGTGAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012555-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTATGTGTATTTTTAGCATCCTCA
R:
ACTAAGTCTTTTATACTCTCGCCACC
Band lengths:
234-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]