GgaEX6043825 @ galGal3
Exon Skipping
Gene
ENSGALG00000004424 | SEC16B
Description
NA
Coordinates
chr8:6934783-6935999:+
Coord C1 exon
chr8:6934783-6934896
Coord A exon
chr8:6935065-6935134
Coord C2 exon
chr8:6935799-6935999
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTGCACTGGCTCCATGCAGGTG
3' ss Score
7.76
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTGGCCGAGCGACTGAAGCTCTGTGACCCACTGCTGCTGGAGATGCCTGAGCAGGACCCGGTGCTGGAGCCCCAGTGGCTGCTGCAGCTCCGCACCTACTGCCAGCGCTGCCAG
Seq A exon
GTGCAGGATGACCTCGCTCCAGAGGTGGCACTGACCCAGCCAGAGCCCTGGGATACTACAGCCACCCCAG
Seq C2 exon
GCAGAGAGATGGTCCATGAGCAGCCCCATAGCGATGGCCCCCACGATGAGCAGTGGCACCAGCCCCCTGTGCCACTGCAGGGACCTGATCCCCACCAGGATGTGTCCATCCCGCCCCTGGAGGTTGCAGTGTTGGGTGTGGGGCCGATCTCCCAGGAAGAGCTTTGCACTGAGCCCTCTCTGCAGGCAGTGCCAACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004424-'17-20,'17-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.792 C2=0.971
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=PD(3.3=21.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGAAGCTCTGTGACCCAC
R:
GCTGGTGCCACTGCTCATC
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]