GgaEX6043825 @ galGal4
Exon Skipping
Gene
ENSGALG00000004424 | SEC16B
Description
protein transport protein Sec16B [Source:RefSeq peptide;Acc:NP_001026440]
Coordinates
chr8:6606212-6607428:+
Coord C1 exon
chr8:6606212-6606325
Coord A exon
chr8:6606494-6606563
Coord C2 exon
chr8:6607228-6607428
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTGCACTGGCTCCATGCAGGTG
3' ss Score
7.76
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTGGCCGAGCGACTGAAGCTCTGTGACCCACTGCTGCTGGAGATGCCTGAGCAGGACCCGGTGCTGGAGCCCCAGTGGCTGCTGCAGCTCCGCACCTACTGCCAGCGCTGCCAG
Seq A exon
GTGCAGGATGACCTCGCTCCAGAGGTGGCACTGACCCAGCCAGAGCCCTGGGATACTACAGCCACCCCAG
Seq C2 exon
GCAGAGAGATGGTCCATGAGCAGCCCCATAGCGATGGCCCCCACGATGAGCAGTGGCACCAGCCCCCTGTGCCACTGCAGGGACCTGATCCCCACCAGGATGTGTCCATCCCGCCCCTGGAGGTTGCAGTGTTGGGTGTGGGGCCGATCTCCCAGGAAGAGCTTTGCACTGAGCCCTCTCTGCAGGCAGTGCCAACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004424-'23-29,'23-27,24-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.792 C2=0.971
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=PD(3.3=21.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGAAGCTCTGTGACCCAC
R:
GCTGGTGCCACTGCTCATC
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]