MmuEX6028531 @ mm10
Exon Skipping
Gene
ENSMUSG00000026589 | Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:157558035-157565529:+
Coord C1 exon
chr1:157558035-157558148
Coord A exon
chr1:157559449-157559521
Coord C2 exon
chr1:157565421-157565529
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTTTACTTTATTTTAAACAGCAA
3' ss Score
7.36
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
CTCGCAGAGAAACTGAAGCTGTCAGATCCTCTGGTTTTAGAAAGACGCCGTGGGGACAGGGACCTGGAACCAGATTGGCTTGTGCAACTGCGGAGGAAGCACAAGGACCTGGAG
Seq A exon
CAAAATAGAACAGGAGCCCCGAGAGATCCTGATTCGACTCCTTCAGATATTTATGGAGCTGGAGGAACAACAG
Seq C2 exon
GAGTCTCCCAGAGCATCTTCTCCTCACCATGCGAGCCCAGGCCTCTCACCAACACCTCCTCTCACATCCCCATCCCTGCCAGGTGCCAGCACCTTCTCGAGAGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026589_MULTIEX1-17/22=16-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.994 C2=1.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=PD(5.7=36.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCTGTCAGATCCTCTGGT
R:
ATGGGGATGTGAGAGGAGGTG
Band lengths:
174-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types