MmuEX6028531 @ mm9
Exon Skipping
Gene
ENSMUSG00000026589 | Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:159488166-159491107:+
Coord C1 exon
chr1:159488166-159488279
Coord A exon
chr1:159489580-159489652
Coord C2 exon
chr1:159490814-159491107
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTTTACTTTATTTTAAACAGCAA
3' ss Score
7.36
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
CTCGCAGAGAAACTGAAGCTGTCAGATCCTCTGGTTTTAGAAAGACGCCGTGGGGACAGGGACCTGGAACCAGATTGGCTTGTGCAACTGCGGAGGAAGCACAAGGACCTGGAG
Seq A exon
CAAAATAGAACAGGAGCCCCGAGAGATCCTGATTCGACTCCTTCAGATATTTATGGAGCTGGAGGAACAACAG
Seq C2 exon
ACACTCCCTACCCTGATCTCTCTGGCCATCAAAACTACTCAGAAGACTCTGAGTACAGCTCCACCTTGTGGTCAACAGCAGAGCAGACAAGCCTGACCAATCCCCTCGCACAGCAGTCTTTCCCCCTGCAGCGAGATACCTATTCAGGACACATGGGAACCCCAGTGCCTCTCTACTCAGTTCCTGCAACCCACTTGGCAGTGACGAGTGGAGCCAGTGGTAGCAGTGTGGCAGTGACGGGGACTCCTGGGGGAAGGGTTGGAGAGGATATGCTGCGGACACATCCTGCCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026589-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=1.000 C2=0.984
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=PD(5.7=36.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTAGAAAGACGCCGTGGGG
R:
GCTTGTCTGCTCTGCTGTTGA
Band lengths:
172-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: