BtaEX6069967 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000854 | SEC16B
Description
SEC16 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr16:60757330-60760305:-
Coord C1 exon
chr16:60760186-60760305
Coord A exon
chr16:60758911-60758983
Coord C2 exon
chr16:60757330-60757614
Length
73 bp
Sequences
Splice sites
3' ss Seq
ATTTTACTTTATCTTAATAGCAA
3' ss Score
6.31
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
CTGGCAGAGAGACTGAAGCTGTCAGATCCTCTGGTTTTAGAACGCCGCCGCCACCGAGGAGACAGGGACCTGGAGCCGGACTGGCTGGTGCACCTTCGGGGGCATCACAGGGAGCTGCAG
Seq A exon
CAAAAGGAAGCAGGAGACATTGGCCGTCCTCAGTCTGCTCAAGTGGTTATTTCGGAAGCCAGAAAAACTCCAG
Seq C2 exon
AAAACACTTTCTATCAAGATCTTTCTGGACCTCAAGGCAACTCAGAAGCCTATGGTGACCGCTCTGCTCTGTGGCCAACTCTGGAGCAGTCGGGCCCAGCCCAGCTCAGCCCACAGCAGCCCCGCTCCTACCCAACAGGTGGCGGTTCTGGGCAGATGGGGGTCCCAGTGCCTCTCTACTCGGTTCCTGAGACCCATCTTCTGGGGACCAGTGGCAGCATGGCAGTGACAGGGGCTCCCGGAGGAACAGCCTGGGAGGAAGCCCAGCAGATCCACCTGCCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000854-'30-28,'30-27,33-28=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=0.880 C2=1.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=PD(5.3=32.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTGGTTTTAGAACGCCG
R:
CAGAGTTGGCCACAGAGCAG
Band lengths:
177-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]