RnoEX0078977 @ rn6
Exon Skipping
Gene
ENSRNOG00000005229 | Sec16b
Description
SEC16 homolog B, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:621658]
Coordinates
chr13:75206549-75209391:+
Coord C1 exon
chr13:75206549-75206662
Coord A exon
chr13:75207855-75207927
Coord C2 exon
chr13:75209080-75209391
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTTTACTTTATTTTAAACAGCAA
3' ss Score
7.36
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
CTTGCAGAGAAACTGAAGCTGTCGGATCCTCTGGTTTTAGAAAGCCGCCGTGGGGACAGGGTCCTGGAACCGGATTGGCTTGTGCAACTGCGGAGGAAGCACAAGGAACTGGAG
Seq A exon
CAAACTAGAACTGGAGACCTCAGAGATCCTGATCTGACTCCTTCAGATATTTATGGAGCCAGAGGAACAACAG
Seq C2 exon
ACACTCCCTACCGCGATCTTTATGGCCAGCAAAACTACTCAGAAGACTCTGAGTACAGCTCAGCCTTGTGGCCAACATCTGAGCAGACAAGCCTGACCAATCCCACCCCACAGCAGCCTTTCCCCCTGCAGCGAGATACCTACTCAGAGAGAGATGGCCCAGTACACATGGGGACCCCAGTGCCTCTTTACTCAGTTCCTGCAACCCACCTGACAGTGATTAGTGGCTCCAGTAGTGGCAGCGGTGTGGCAGTGACAGGGGCTCCTGGAGGAAGGGTTGGAGAGGAGATGCTGCAGAAACATCCTGCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005229-'23-30,'23-29,24-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.960 C2=0.952
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=PD(5.7=36.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAAGCACAAGGAACTGG
R:
AGTAGGTATCTCGCTGCAGGG
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]