GgaEX6044072 @ galGal3
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:11985151-11988980:+
Coord C1 exon
chr8:11985151-11985240
Coord A exon
chr8:11985520-11985573
Coord C2 exon
chr8:11988873-11988980
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACACTTTTTTCATCTTTTAGGGT
3' ss Score
11.63
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
GGTGACCCAGGTCCTCAAGGTATTCCTGGGAAAGATGGACCAGCAGGTCTTCGTGGTTTCCCTGGAGAGAGAGGCCTTCCAGGAGCGCAG
Seq A exon
GGTCCCGCTGGTCTAAAAGGAGGGGAAGGCCCACAAGGTCCACCTGGCCCTGTT
Seq C2 exon
GGCTCACCAGGGGAACGTGGAGCAGCAGGCACTGCTGGTCCAATTGGTCTACCAGGTCGTCCTGGACCTCAGGGTCCTCCAGGCCCTGCAGGGGAGAAGGGTGCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'43-44,'43-43,44-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(24.6=53.3),PF0139113=Collagen=PU(42.0=96.7)
A:
PF0139113=Collagen=FE(19.5=100),PF0139113=Collagen=PU(12.6=61.1)
C2:
PF0139113=Collagen=PD(29.0=55.6),PF0139113=Collagen=PU(42.0=80.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCCAGGTCCTCAAGGTA
R:
AGACCAATTGGACCAGCAGTG
Band lengths:
139-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]