GgaEX6046224 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr9:14260513-14262918:-
Coord C1 exon
chr9:14262789-14262918
Coord A exon
chr9:14261903-14262071
Coord C2 exon
chr9:14260513-14260689
Length
169 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTGAACTTTCCTAGATA
3' ss Score
7.98
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
TTGGATGGTGTAAGGGTGAGAGCCCCTGTTCGTCCCCATGATGGTATTCGTATATATCAGAGGACAACAAGAATTTACCTGGAGACAGATTTTGGCTTATACCTGAGCTACGATGGTGATCAAAATGCAG
Seq A exon
ATATAAAGCTGGCCAACACCTACAACAACAGAGTAGAAGGTTTGTGTGGTGACTTTGACGGGAGACCTAGAAATGACTTCACAAACCCAGATGGTGTTTGGCTGAAGAATGTGAATGCATTTGGTGAGAGCTGGAAGGTTCCTGTGAAAAGAAGAACCTCTCGATTCAG
Seq C2 exon
GCGAGAAACCATTGTGGAAGATGAGCCTGATGAGGAACCAGATACAGGGCTCTATCAAGGCTGCAGTGAAAATAAGCTGATGCAAGAAAACAGCACTTCTAAGTGTCAAATTCTGACTGCATTGGATGGTCCTTTTGCAAATTGTCATTCTGCAGTCCCACCAGAGCCCTATTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007208-'32-32,'32-31,33-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.035 C2=0.367
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(27.6=100)
A:
PF0009420=VWD=PD(20.5=56.1)
C2:
PF087426=C8=PU(41.3=51.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTTCGTCCCCATGATGGT
R:
GCAAAAGGACCATCCAATGCA
Band lengths:
244-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]