HsaEX1044331 @ hg38
Exon Skipping
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100789218-100792148:+
Coord C1 exon
chr7:100789218-100789347
Coord A exon
chr7:100790942-100791113
Coord C2 exon
chr7:100791966-100792148
Length
172 bp
Sequences
Splice sites
3' ss Seq
GGACCCCCTTCCTCCCGCAGTGA
3' ss Score
8.99
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
Exon sequences
Seq C1 exon
GTCAACAACCAGAAGATGGCCGTCCCCTACAGGCCAAATGAACACCTGCGGGTCACCCTGTGGGGCCAACGGCTCTACCTGGTCACCGACTTTGAGCTGGTCGTCAGCTTTGGTGGAAGGAAAAATGCAG
Seq A exon
TGATCTCCCTACCCAGCATGTACGAGGGGCTTGTGAGTGGCCTGTGCGGAAACTACGACAAGAACCGCAAGAATGACATGATGCTGCCCAGTGGCGCCCTGACCCAGAACCTCAACACCTTTGGCAACAGCTGGGAGGTGAAGACCGAGGACGCACTCCTGCGCTTCCCCAG
Seq C2 exon
GGCTATACCAGCGGAGGAGGAGGGACAAGGGGCGGAGCTGGGCCTCCGCACGGGCCTCCAAGTGTCCGAATGTAGCCCGGAGCAGCTGGCGAGCAACAGCACCCAGGCCTGTAGGGTGCTGGCAGACCCCCAGGGCCCCTTTGCTGCCTGTCACCAGACGGTGGCCCCAGAGCCCTTCCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.052 C2=0.101
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(27.7=100)
A:
PF0009420=VWD=PD(20.6=55.2)
C2:
PF087426=C8=PU(39.2=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTACCTGGTCACCGACTT
R:
TCTTGGAAGGGCTCTGGGG
Band lengths:
242-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains