MmuEX0052614 @ mm10
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137386330-137387950:-
Coord C1 exon
chr5:137387821-137387950
Coord A exon
chr5:137386910-137387081
Coord C2 exon
chr5:137386330-137386500
Length
172 bp
Sequences
Splice sites
3' ss Seq
GCACCTCCTTTTTCCTGCAGTGA
3' ss Score
8.66
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTCAACGATGAAAAGGTGGCGGTCCCCTACAATCCAAACGAGCACCTTCGGGTCATGCTGCGGGCTCAGCGGCTGCTTCTCGTCACAGACTTCGAAATGGTGCTGGATTTTGATGGAAAACACAGTGCAG
Seq A exon
TGATCTCCTTGCCTACCACATACCGTGGGCTGACACGGGGCCTGTGTGGAAACTATGACAGGGACCAGTCCAATGAACTCATGCTGCCCAGTGGAGTACTCACCTCAAATGTCCATGTCTATGGCAACAGTTGGGAGGTGAAGGCGCAGCATGCCTTCTTCCGCTTCCCAAG
Seq C2 exon
GGCCCTACCAGAAGAAGAGGAAAGAGACGAAGAGCCTGACCTTCTCCAATCAGAATGCAGCCAAGAGCAGACTGCGCTTATCAGCAGCACCCAGGCCTGTAGGGTGCTTGTGGACCCCCAGGGACCCTTTGCTGCATGTCACCAGATCATAGCCCCAGAGCCCTTTGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.224
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(27.9=100)
A:
PF0009420=VWD=PD(20.8=55.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCAAACGAGCACCTTCGG
R:
TGGGGCTATGATCTGGTGACA
Band lengths:
257-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types