BtaEX6110587 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003432 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr25:36369672-36370669:-
Coord C1 exon
chr25:36370540-36370669
Coord A exon
chr25:36370157-36370331
Coord C2 exon
chr25:36369672-36369848
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGGGCCCCCTCCTCCCGCAGTGA
3' ss Score
9.76
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTCAATGGTCAGAAGGTGACTGCCCCCTATGAGCCCGTCGACCAGCTGCGGGTCTCCCTCCGAAGCGATCGCCTGTTTGTGATCACGGACTTTGAGCTGGTGGTCAGCTTCAACGGAAAGAACAATGCAG
Seq A exon
TGATCTCCCTGCCCCTCACTTACCGGAAGCTCGTGCTCGGCCTGTGCGGCAACTGCGACCAGAACAAGAGGAATGACTTTATGCTGCCCAACGGGGCCGTCACCCAGAATCTCCTTGCTTTTGGCAACAGCTGGGAGGTAAAGATGACCGAGGGAAGCTTGCCCCGCGTCTCAAG
Seq C2 exon
GGCTGTACAGGAGGAGGAAGTGAAAGAGGAAGCGGCGCTAGGCTTTCTTGATGTGTCGGGATGCCACCCGGAGGAGCTGCAGCTCATCAACCGCACCCAGGCGTGTGGGGTGCTGGCGGACCCCGAGGGCCCCTTTGCTGTCTGTCACCAGACTGTGGCCCCCGAGCCCTTCCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003432-'33-37,'33-36,35-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.050
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(27.7=100)
A:
PF0009420=VWD=PD(20.6=54.2)
C2:
PF087426=C8=PU(38.5=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATGAGCCCGTCGACCAG
R:
GGTGACAGACAGCAAAGGGG
Band lengths:
254-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]