Special

MmuEX0052614 @ mm9

Exon Skipping

Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137827558-137829178:-
Coord C1 exon
chr5:137829049-137829178
Coord A exon
chr5:137828138-137828309
Coord C2 exon
chr5:137827558-137827728
Length
172 bp
Sequences
Splice sites
3' ss Seq
GCACCTCCTTTTTCCTGCAGTGA
3' ss Score
8.66
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTCAACGATGAAAAGGTGGCGGTCCCCTACAATCCAAACGAGCACCTTCGGGTCATGCTGCGGGCTCAGCGGCTGCTTCTCGTCACAGACTTCGAAATGGTGCTGGATTTTGATGGAAAACACAGTGCAG
Seq A exon
TGATCTCCTTGCCTACCACATACCGTGGGCTGACACGGGGCCTGTGTGGAAACTATGACAGGGACCAGTCCAATGAACTCATGCTGCCCAGTGGAGTACTCACCTCAAATGTCCATGTCTATGGCAACAGTTGGGAGGTGAAGGCGCAGCATGCCTTCTTCCGCTTCCCAAG
Seq C2 exon
GGCCCTACCAGAAGAAGAGGAAAGAGACGAAGAGCCTGACCTTCTCCAATCAGAATGCAGCCAAGAGCAGACTGCGCTTATCAGCAGCACCCAGGCCTGTAGGGTGCTTGTGGACCCCCAGGGACCCTTTGCTGCATGTCACCAGATCATAGCCCCAGAGCCCTTTGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.224
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0009420=VWD=FE(27.9=100)

							
A:
PF0009420=VWD=PD(20.8=55.2)

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000114068





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000106669, ENSMUSP00000114068f5547A, ENSMUSP00000132895
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr7:100790942-100791113 
HsaEX1044331
(ZAN)
Human
(hg19)
chr7:100388564-100388735 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr25:36370157-36370331 
HIGH PSI
BtaEX6110587
(ZAN)
Chicken
(galGal4)
chr9:12635272-12635440 
HIGH PSI
GgaEX6046224
([1])
Chicken
(galGal3)
chr9:14290588-14290727 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AATCCAAACGAGCACCTTCGG

				
R: 
TGGGGCTATGATCTGGTGACA

				
Band lengths: 
257-429

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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