GgaEX6046224 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NB86]
Coordinates
chr9:12633882-12636287:-
Coord C1 exon
chr9:12636158-12636287
Coord A exon
chr9:12635272-12635440
Coord C2 exon
chr9:12633882-12634058
Length
169 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTGAACTTTCCTAGATA
3' ss Score
7.98
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
TTGGATGGTGTAAGGGTGAGAGCCCCTGTTCGTCCCCATGATGGTATTCGTATATATCAGAGGACAACAAGAATTTACCTGGAGACAGATTTTGGCTTATACCTGAGCTACGATGGTGATCAAAATGCAG
Seq A exon
ATATAAAGCTGGCCAACACCTACAACAACAGAGTAGAAGGTTTGTGTGGTGACTTTGACGGGAGACCTAGAAATGACTTCACAAACCCAGATGGTGTTTGGCTGAAGAATGTGAATGCATTTGGTGAGAGCTGGAAGGTTCCTGTGAAAAGAAGAACCTCTCGATTCAG
Seq C2 exon
GCGAGAAACCATTGTGGAAGATGAGCCTGATGAGGAACCAGATACAGGGCTCTATCAAGGCTGCAGTGAAAATAAGCTGATGCAAGAAAACAGCACTTCTAAGTGTCAAATTCTGACTGCATTGGATGGTCCTTTTGCAAATTGTCATTCTGCAGTCCCACCAGAGCCCTATTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007208-'24-24,'24-23,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.035 C2=0.367
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(27.6=100)
A:
PF0009420=VWD=PD(20.5=56.1)
C2:
PF087426=C8=PU(41.3=51.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTTCGTCCCCATGATGGT
R:
GCAAAAGGACCATCCAATGCA
Band lengths:
244-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]