GgaEX6046990 @ galGal3
Exon Skipping
Gene
ENSGALG00000006271 | RACGAP1
Description
NA
Coordinates
chrE22C19W28_E50C23:317678-318337:+
Coord C1 exon
chrE22C19W28_E50C23:317678-317814
Coord A exon
chrE22C19W28_E50C23:318014-318083
Coord C2 exon
chrE22C19W28_E50C23:318284-318337
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTCTAATTCTTGGTTTTTAGACT
3' ss Score
6.99
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
GAGAGGCAAATACAGCTGATTCGAGAGCTGCTCATGTGTGATGCATCTGGGAGCATTCAGCTAAGTGAAGAACAGAAGTCTGCCCTTGCCTTCCTTAACAGACCACAGGTTTCTGTAGGAGGTTCAGGCAATAAGAG
Seq A exon
ACTGTCTACAATAGATGAATCTGGCTCAATTCTGTCAGACATCAGCTTTGACAAGACTGATGATTCACTG
Seq C2 exon
GACTGGGATTCCTCTGCGGTGAAGGCTGTCAGACTGAAGAGGAGAGAGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006271-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.042 C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
PF131031=TonB_2=PU(38.9=87.5)
C2:
PF131031=TonB_2=FE(31.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGATTCGAGAGCTGCTCA
R:
TCCTCTTCAGTCTGACAGCCT
Band lengths:
167-237
Functional annotations
There are 2 annotated functions for this event
PMID: 19468300
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, mutation analysis, protein kinase assay. ELM ID: ELMI003372; ELM sequence: SDISFDK; Overlap: FULL
PMID: 27453045
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, coimmunoprecipitation, isothermal titration calorimetry. ELM ID: ELMI003173; ELM sequence: LSTIDE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]