GgaEX6047185 @ galGal3
Exon Skipping
Gene
ENSGALG00000022619 | ZNF541
Description
NA
Coordinates
chrUn_random:732304-733697:-
Coord C1 exon
chrUn_random:733584-733697
Coord A exon
chrUn_random:732799-733123
Coord C2 exon
chrUn_random:732304-732367
Length
325 bp
Sequences
Splice sites
3' ss Seq
CTTTGGAATCCTTTATCCAGGTG
3' ss Score
7.39
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GGCTGTGCTGCAGAGGACGGATCCGCTGCGAGGCCGGAGCTGCAGGAGGAGCCCTGCGAGGCCGGGGCTGCGCTGCTCATCCCCGTCTCAGTGCCAGTGCTGCCTGGGGGTGAG
Seq A exon
GTGACCCCCAAGGAGAGCCAGGATGGGAAGAGCCCTCAGCTCAGCTCGCACCCGAAGAAGAGGAAGCGGCAGATTCTCCCCAAACCCCTCTTCATCCCCCCCCCGCCGCCCCCCGAGGCGCAGCCGGGCCCTGGGGGCTGCTACCGCAGCAACCTGCGCTCCCCGGTGCTGCTGATGGACCGCCTGCTGCGGGACCTGCTGCAGTGCTCGCCCTACACCCCCCCGCCCATGCTCAGCCCCGTCCGCGAGGGCTCGGGGCTCTACTTCAACGCCGTCTGCTCATCCACTGCTGCAGAGCCTTGTCGGCTCTTGGGCAGCGTGCTGG
Seq C2 exon
ACAGAATGGACCAAGACTTCGGGCTGTGCCTCATGAAGGACGGCACCAAAATCAGCATTGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022619-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=0.477 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]