BtaEX0041377 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012606 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
chr18:54939462-54942597:-
Coord C1 exon
chr18:54942442-54942597
Coord A exon
chr18:54941385-54941709
Coord C2 exon
chr18:54939462-54939525
Length
325 bp
Sequences
Splice sites
3' ss Seq
TGAAGCCTCTTCTTGTCCAGGGA
3' ss Score
6.52
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GTGTTTGGCATGGAGTTTTGCAAGCCCTCAAGACAGGTGCTGAGGCCAGAGGGGGATGGGCAGAGTCCCCTGGGAGCCAGAAAGTGCCTGGACAACCCAACCGCAGCCTCTTTGGGGGTCCCTGTGGCCCCAGCAAACCGCCCCCCAGGGAGCAAG
Seq A exon
GGACAGGAGAAGGATGGGGACGAGAGAAACAGCAAGGAGGATGGCCAGCACCGAAAGCGGAAGAAGCGCCCCCAGCCCAAGGCGCTGTTCGTCCCTCCTCCGCCCCCCACGTTCGGGCAGCCGGGCCCGGGGGGGTGTCACCAGAGCCGCCTGCGCTCCCCCGTGTTCCTGGTGGACCGCCTCCTGAAGGGGCTGTTCCAGTGCTCGCCCTACACACCGCCGCCCATGCTCAGCCCCATCCGGGAGGGCTCAGGGCTCTATTTCAACACCCTCTGTTCCACGTCCGCTCAGGCCAGCCCTGACAGGCTCATCAGCACGGTGCTCA
Seq C2 exon
ATCCCCTGGATGACTCCTTCGGCATCTGTCTGGTGAAGGACGACACCAAGATCAGCATTGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012606_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=0.518 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTGGCATGGAGTTTTGCA
R:
ATGCTGATCTTGGTGTCGTCC
Band lengths:
214-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development