HsaEX0073896 @ hg38
Exon Skipping
Gene
ENSG00000118156 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
chr19:47532909-47539878:-
Coord C1 exon
chr19:47539705-47539878
Coord A exon
chr19:47538142-47538439
Coord C2 exon
chr19:47532909-47532972
Length
298 bp
Sequences
Splice sites
3' ss Seq
GTGGTTCTAAACTTCTTCAGGGA
3' ss Score
7.04
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GTGTTTGGCACAGAGTTTTGCAAGCCGCTAAGACAGGTGCTGAGGCCAGAAGGGGACAGGCATAGTCCCCCAGGAACCAAGAAGCCCTTGGACCCCACAGCTGCAGCCCCTTTGGTGGTCCCCCAATCGATCCCCGTGGTTCCAGTGACCCGACACATAGGGAGCATGGCCATG
Seq A exon
GGACAAGAGAAAGACGGGGAGGAGCGAGACAGCAAGGAGAGCAGCCAGCAGAGAAAGCGGAAGAAGCGGCCCCCACCCTCCACGGCTGGGGAGCCTGGCCCTGCAGGATGCCACCAGAGCCGCCTGCGGTCACCCATGTTCCTGGTGGACTGCCTCCTGAAGGGCTTATTCCAGTGCTCCCCCTACACACCACCCCCAATGCTCAGCCCCATCCGGGAGGGCTCTGGGGTGTACTTCAACACCCTCTGTTCCACGTCCACTCAGGCCAGCCCTGACCAGCTCATCAGCTCCATGCTCG
Seq C2 exon
ATCAAGTGGATGGGTCCTTTGGCATCTGTGTGGTGAAGGATGACACCAAAATCAGCATTGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118156_MULTIEX1-2/8=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.664 A=0.457 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTGGCACAGAGTTTTGCA
R:
GGCTCAATGCTGATTTTGGTGT
Band lengths:
238-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development