MmuEX6008503 @ mm10
Exon Skipping
Gene
ENSMUSG00000078796 | Zfp541
Description
zinc finger protein 541 [Source:MGI Symbol;Acc:MGI:3647699]
Coordinates
chr7:16082052-16089860:+
Coord C1 exon
chr7:16082052-16082211
Coord A exon
chr7:16083254-16083572
Coord C2 exon
chr7:16089797-16089860
Length
319 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCCTCTCTTCTTCAGGGA
3' ss Score
11.77
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CCATCAGCCAAATGGGGGTCCCACAGACTGGATGGAGTCAAAGAGCACTTTTGTGTGCAAGAATTGCAGCCAGATGTTTTACACCGAGAAAGGGCTGAGCAGCCACATGTGTTTCCATAGTGACCAGTGGCCATCACCTCGAGGGAAGCAGGAGCAACAG
Seq A exon
GGACAAGAAAAAGATGGGGAAGAGAGAGACAGCAAGGAGAGCTGCCAGTACAGAAAGCGGAAGAAGCGGCCCCAGCCCAAGGCCCTGTTTGCCCCTCCTGCACCCTCTGCCCTCGGGGAACCAGGCCCAGGAGGGTGCCACCAGAGCTGCCTGCACTCTCCTGTGTTCCTGGTGGATCACCTCCTGAAGGGCTTGTTTCAGTGCTCTCCCTACACACCACCGCCTATGCTTAGCCCGATTCGTGAGGGCTCTGGGCTGTACTTCAATACCCTCTGCTCCACATCCAGGGCTGGGCCCCACCTTATCAGCCCTGTACTTG
Seq C2 exon
ACCAAGTGGACAGCTCCTTTGGCATCTGTGTGGTGAAGGATGACACTAAAATCAGCATCGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078796-'14-18,'14-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=0.352 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGCCAAATGGGGGTCC
R:
GGTTCGATGCTGATTTTAGTGTCA
Band lengths:
223-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types