GgaEX6047597 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrUn_random:28142284-28142830:+
Coord C1 exon
chrUn_random:28142284-28142370
Coord A exon
chrUn_random:28142493-28142591
Coord C2 exon
chrUn_random:28142679-28142830
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCTCTTTTCTCAAGGAA
3' ss Score
9.63
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GTGTGAACAAATCCCTCTGCAGCGACACGGAGAGCCTCAGTGGGAGCTGTGAGTCACGATCCTTGGACTCTCCCAGCTCCAGTCCAG
Seq A exon
GAAACTCCACCAGGAAACTGCTGAAAGCTTCGTCCACGGGCACCATGTCCTCCTCCGATGACTTTGAAGAGAGAGATTCACTGCAAACTTCTGAAAATG
Seq C2 exon
AAAATGGCACATCCCAGCAGCAGTTCAGGAACGCTCTCCTCTCCAGCGCTGCACAGACCCATCGACTCAGGAAACTGCGGGGACCAACCAAGTGCAGAGAGTGCGACACTTTCATGGTCAACGGCTTCGAGTGTGAGGAGGTGAGAGCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013314-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.633 A=1.000 C2=0.490
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGAGTCACGATCCTTGG
R:
CTCGAAGCCGTTGACCATGAA
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]