HsaEX0027788 @ hg19
Exon Skipping
Gene
ENSG00000089639 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:24852]
Coordinates
chr19:19746224-19747605:-
Coord C1 exon
chr19:19747516-19747605
Coord A exon
chr19:19746453-19746530
Coord C2 exon
chr19:19746224-19746378
Length
78 bp
Sequences
Splice sites
3' ss Seq
CATGATTCCTCTGACCCCAGGCG
3' ss Score
6.87
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GGACTCCAGGCCCCACTCCGGGCAGCGATGTGGACAGCGTGGGTGGCGGCAGCGAGTCTCGGTCCCTGGACTCACCCACTTCCAGCCCAG
Seq A exon
GCGCTGGCACGAGGCAGCTGGTGAAGGCTTCGTCCACAGGCACTGAGTCCTCAGATGACTTTGAGGAGCGAGACCCTG
Seq C2 exon
ACCTGGGAGACGGGCTGGAGAATGGGCTGGGCAGCCCCTTCGGGAAGTGGACACTGTCCAGCGCGGCTCAGACCCACCAGCTGCGGCGACTGCGGGGCCCAGCCAAGTGCCGCGAGTGCGAAGCCTTCATGGTCAGCGGGACGGAGTGTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089639_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.199
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(56.2=51.9)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTCGGTCCCTGGACTC
R:
GACCATGAAGGCTTCGCACTC
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)