MmuEX6035999 @ mm9
Exon Skipping
Gene
ENSMUSG00000036246 | Gmip
Description
Gem-interacting protein [Source:MGI Symbol;Acc:MGI:1926066]
Coordinates
chr8:72339513-72340262:+
Coord C1 exon
chr8:72339513-72339590
Coord A exon
chr8:72339950-72340027
Coord C2 exon
chr8:72340108-72340262
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTGTGCTCCTCTGACCGCAGGTG
3' ss Score
9.88
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GAATCCCAGGCAGTGATGTGGACAGTGTAGGTGGTGGCAGTGAGTCCCGGTCTTTGGATTCTCCCACTTCCAGCCCAG
Seq A exon
GTGCTGGGGCCCGCCGACTTGTAAAGGCTTCGTCCACAGGCACGGAGTCCTCCGATGACTTTGAGGAGCGAGACCCTG
Seq C2 exon
ATCTGGGGGATGGGATAGAGAATGGAGTAGGCAGCCCGTTCAGGAAGTGGACACTGTCCACAGCTGCTCAAACCCACCGACTGCGGCGGCTGCGGGGCCCAGCCAAGTGCAGAGAATGTGAAGCCTTCATGGTCAGCGGGACAGAATGTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036246-'17-23,'17-22,19-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.173
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(56.2=51.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGTCCCGGTCTTTGGAT
R:
GCTGACCATGAAGGCTTCACA
Band lengths:
177-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: