RnoEX6055354 @ rn6
Exon Skipping
Gene
ENSRNOG00000027257 | Gmip
Description
Gem-interacting protein [Source:RGD Symbol;Acc:1565577]
Coordinates
chr16:21355332-21355954:-
Coord C1 exon
chr16:21355877-21355954
Coord A exon
chr16:21355565-21355642
Coord C2 exon
chr16:21355332-21355486
Length
78 bp
Sequences
Splice sites
3' ss Seq
AACCATTAACCTCTGACCAGGTG
3' ss Score
5.7
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GGATCCCAGGCAGTGATGTGGACAGCGTAGGTGGTGGCAGTGAGTCCCGGTCCTTGGATTCTCCCACTTCCAGCCCAG
Seq A exon
GTGCTGGCGCCCGCCGGCTGGTAAAGGCGTCATCCACGGGCACGGAGTCCTCAGATGACTTTGAGGAGCGGGACCCTG
Seq C2 exon
ATCTGGGGGATGGGATGGAGAATGGAACAGGCAGCCCCTTCAGGAAGTGGACACTGTCTACAGCCGCTCAAACCCACCGGCTACGGCGACTGCGGGGCCCAGCCAAGTGCAGAGAATGTGAAGCCTTCATGGTCAGCGGGACAGAGTGTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027257-'19-21,'19-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.327
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(56.2=51.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCCGGTCCTTGGATTCTC
R:
GCTGACCATGAAGGCTTCACA
Band lengths:
173-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]