BtaEX6036623 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015144 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
chr7:3618316-3619042:+
Coord C1 exon
chr7:3618316-3618405
Coord A exon
chr7:3618737-3618814
Coord C2 exon
chr7:3618888-3619042
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTGTAACCTTCTGACTCCAGGCT
3' ss Score
5.68
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GAGCTCCGGGCCCCACTGTGGGCAGCGATGTGGACAGTGTGGGCGGCAGCAGCGAGTCTCGCTCCCAGGACTCTCCCACTTCCAGTCCAG
Seq A exon
GCTCTGGCACAAGGCGGCTGGTAAAAGTGTCATCCATAGGCACCGAGTCTTCAGATGACTTTGAGGAGCGAGACCCTG
Seq C2 exon
ACCTGGGAGATGGGCTGGAGAACGGGCCAGGGACCCCCTTCAAGAAGTGGATACTATCCAACGCGGCCCAGACCCACCGGTTGCGGCGGCTGCGGGGCCCAGCCAAGTGCCGAGAGTGTGAGGCTTTCATGGTCAGCGGGACAGAGTGCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015144-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(56.2=51.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACTCTCCCACTTCCAGT
R:
CTGTCCCGCTGACCATGAAAG
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]